Welcome to T3/Wheat
T3/Wheat archive site last updated Jan 2020
T3 is a repository for public wheat data generated by the Wheat Coordinated Agricultural Project (Wheat CAP). It also contains data from the US Uniform Regional Scab Nurseries, supported by the US Wheat and Barley Scab Initiative (USWBSI). Funding is provided by the National Institute for Food and Agriculture (NIFA) and the United States Department of Agriculture (USDA). The current project is funded through NIFA's International Wheat Yield Partnership (IWYP) and part of the Agriculture and Food Research Initiative (AFRI).
Data Usage Policy
The data on this database is shared according to the Toronto agreement.
Click here to view the full data usage policy.
Citation
If data on The Triticeae Toolbox was relevant to analyses or findings that you publish, please cite:
Blake, V., Birkett, C.L., Matthews, D.E., Hane, D., Bradbury, P., Jannink, J. 2016. The Triticeae Toolbox: Combining Phenotype and Genotype Data to Advance Small-Grains Breeding. The Plant Genome. doi: 10.3835/PlantGenome2014.12.0099.
Genotype projects added
March 1, 2021
Site update
November 1, 2020 SGN-285.0
Analysis
Manage (contact us to use these features)
Breedbase Workshop Notes & Videos
September 10, 2020
T3 hosted a practical remote workshop demonstrating the process of uploading field trial data to the database. Notes from that workshop, which include step-by-step instructions on how to upload a sample dataset, are now available.
Video recordings of the workshop are available on the Breedbase YouTube Channel.
Loci and Genes
August 2020
UniProt release April 2020 loaded in Loci & Genes
EnsemblPlant release August 2020 loaded in Genome Features
Scab Forum Presentation
Dec 9, 2019
The presentation (with step-by-step screenshots of the demos) of T3/Breedbase given at the 2019 Wheat & Barley Scab Forum can be found here.
T3 Phenotype Data Loaded
Nov 29, 2019
2456 Phenotype trials and mean data loaded from T3.
Analyze, Selection Index
The Selection Index determines rankings of accessions based on more than one trait
Analyze, Summarize Trials
Summarize Trials shows Least squares mean values in selected Trials
Search, Loci & Genes
Search Loci & Genes allows you to search for genetic characters and associated accessions
Explore T3/Wheat
To view most of the data on T3/Wheat, you'll first need to create a free account.
Login
If you already have an account, login to get full access.
Use the Quick Search to find an Accession, Trial, Trait, etc by name:
Use the Search Wizard to explore the database or search individual data types:
Explore Experiments in the Search Wizard:
You must first log in to view the lists of experiments...
Submit Phenotype Data
To submit phenotype data to T3/Wheat follow these three general steps:
Step 1: Create Upload Templates
Data submitted to T3/Wheat should be in the format of the upload template for the data type you are submitting. View the detailed upload instructions for specific information on each data type.
Step 2: Add Data to Sandbox
Once you have your upload templates, you can test-load them on this Sandbox site to check for any errors.
Step 3: Submit Trial Data
If your trial data has been successfully added to the Sandbox you can submit your trials directly to the production site by clicking the Submit Trial button on the trial detail page.
If your data has not been added to the Sandbox or if you would prefer to submit your files directly to the production site, you can submit your individual upload templates or data files to us using the Phenotype Submission Form.
Detailed Upload Instructions
Submit Genotype Data
Please Contact Us if you have genotype data you would like to submit to T3/Wheat.
User Guides
New to T3/Wheat?
View the comprehensive Documentation from the Breedbase team to learn about available features or watch the detailed Video Tutorials.
T3/Wheat is open source software and available under the MIT License and may be downloaded from GitHub.
Working
