Sorry!, some features may not work in outdated browsers
SANDBOX SITE - Data added to this site will be periodically cleared
This site uses cookies to provide logins and other features. Please accept the use of cookies by clicking Accept.
MNase chromatin and VEP Results
This report provides the chromatin accessibility score for Chinese Spring using RefSeq v1 assembly. A higher score corresponds to more open chromatin.
The accessibility score can be used to prioritize genomic variants and to explain phenotypes.
The MNase chromatin results are described in Wheat MNase publication.
The accessibility score is a calculation of the differential nuclease sensitivity (DNS) for 10-bp intervals across the genome.
The MSF/MRF is the MNase sensitive and resistant footprint. It segments the genome using the iSeg program based on regions > 1.5 Std Dev of accessibility score.
The gene, consequence, and impact columns lists the results of the
Variant Effect Predictor analysis if available, otherwise it lists the genes that are within the gene model.
Chromosome:
Start:
Stop:
Your Lists
Public Lists
List Contents
List Validation Report: Failed
Elements not found:
Optional: Add Missing Accessions to A List
Mismatched case
Click the Adjust Case button to align the case in the list with what is in the database.
Multiple mismatched case
Items listed here have mulitple case mismatches and must be fixed manually. If accessions need to be merged, contact the database directly.
List elements matching a synonym
Multiple synonym matches
Multiple synonym matches have to be resolved manually. Contact database administrators if necessary.
Fuzzy Search Results
Synonym Search Results
Available Seedlots
Your Datasets
Public Datasets
Dataset Contents
Dataset Validation Failed
Elements not found:
Your Calendar
Having trouble viewing events on the calendar? Are you associated with the breeding program you are interested in viewing?
If you've forgotten your username, enter your email address below. An email will be sent with any account username(s) associated with your email address.
Reset Password
To reset your password, please enter your email address. A link will be sent to that address with a link that will enable you to reset your password.
